Cell-type annotations
Explore the human cell types, subtypes and states in SCREATE. Each page contains the same marker genes, annotation genes, biological rationale and functional implications shown in the Cell Browser, together with the original cell count and links to related populations.
34 types · 152 subtypes · 688 states. All descriptions are available as ordinary web pages without loading a matrix or running the interactive browsers. Use your browser’s Find command to search this directory.
All cell-type and state marker genes in one table →
SCREATE connects cell identity with genes, traits and regulatory elements. The Cell Browser explores cells and expression; the Genome Browser explores genomic tracks and trait/gene views.
adipocyte
adipose_stem_and_progenitor_cell
astrocyte
B_cell
cardiomyocyte
chondrocyte
dendritic_cell
endothelial_cell
epithelial_cell
EPI.alveolar_type_1
EPI.alveolar_type_2
EPI.bile_duct_cholangiocyte
EPI.cervical_suprabasal
EPI.colonic_enteroendocrine
EPI.colonic_tuft
EPI.colonocyte
EPI.ectocervical_granular
EPI.endocervical_secretory
EPI.esophageal_basal
EPI.esophageal_suprabasal
EPI.extrahepatic_cholangiocyte
EPI.gastric_foveolar
EPI.hepatic_ductular_cholangiocyte
- EPI.hepatic_ductular_cholangiocyte.acute_phase_complement
- EPI.hepatic_ductular_cholangiocyte.barrier_chemokine
- EPI.hepatic_ductular_cholangiocyte.ion_transport
- EPI.hepatic_ductular_cholangiocyte.lipid_mevalonate
- EPI.hepatic_ductular_cholangiocyte.mechanosense_adhesion
- EPI.hepatic_ductular_cholangiocyte.polarity
- EPI.hepatic_ductular_cholangiocyte.secretory_transport
- EPI.hepatic_ductular_cholangiocyte.stress
EPI.ileal_bile_transport
EPI.ileal_enterocyte_absorptive
EPI.ileal_enterocyte_crypt
EPI.ileal_goblet
EPI.intrahepatic_cholangiocyte_defense
EPI.intrahepatic_cholangiocyte_transport
EPI.lung_club_secretory
EPI.lung_multiciliated
EPI.pancreatic_acinar
EPI.pancreatic_ductal_bicarbonate
- EPI.pancreatic_ductal_bicarbonate.activated
- EPI.pancreatic_ductal_bicarbonate.barrier_mucin
- EPI.pancreatic_ductal_bicarbonate.baseline
- EPI.pancreatic_ductal_bicarbonate.inflammatory
- EPI.pancreatic_ductal_bicarbonate.junctional_remodel
- EPI.pancreatic_ductal_bicarbonate.renewal_ion_pump
- EPI.pancreatic_ductal_bicarbonate.repair_actin_junction
- EPI.pancreatic_ductal_bicarbonate.stress
EPI.pancreatic_ductal_mucinous
EPI.pancreatic_ductal_perivascular
EPI.pancreatic_ductal_progenitor
EPI.pancreatic_islet
EPI.renal_distal_tubule
EPI.renal_immature_ureteric_bud
EPI.renal_intercalated_cell_type_A
EPI.renal_intercalated_cell_type_B
EPI.renal_principal_cell
EPI.renal_proximal_tubule
EPI.renal_thick_ascending_limb
EPI.salivary_duct_excretory
EPI.salivary_duct_ion_transport
EPI.salivary_intercalated_defense
EPI.salivary_mucous_acinar
EPI.salivary_myoepithelial
EPI.salivary_serous_acinar
EPI.skin_appendage_keratinocyte
EPI.skin_follicular_keratinizing
EPI.skin_hair_follicle_bulge
EPI.skin_hair_follicle_companion
EPI.skin_interfollicular_spinous
- EPI.skin_interfollicular_spinous.baseline
- EPI.skin_interfollicular_spinous.early_differentiation
- EPI.skin_interfollicular_spinous.inflammatory
- EPI.skin_interfollicular_spinous.proliferative
- EPI.skin_interfollicular_spinous.stress_oxidative
- EPI.skin_interfollicular_spinous.stress_UPR
- EPI.skin_interfollicular_spinous.transition_basal
- EPI.skin_interfollicular_spinous.upper_lipid
EPI.skin_keratinocyte_basal
EPI.skin_keratinocyte_progenitor
EPI.skin_keratinocyte_proliferating
EPI.skin_sebaceous_duct_luminal
EPI.skin_sweat_duct_keratinocyte
- EPI.skin_sweat_duct_keratinocyte.barrier
- EPI.skin_sweat_duct_keratinocyte.cornifying_acrosyringeal
- EPI.skin_sweat_duct_keratinocyte.proliferative_G2M
- EPI.skin_sweat_duct_keratinocyte.proliferative_S
- EPI.skin_sweat_duct_keratinocyte.repair
- EPI.skin_sweat_duct_keratinocyte.signal_gate
- EPI.skin_sweat_duct_keratinocyte.suprabasal_hypoxic
EPI.thymic_cortical
EPI.thymic_medullary
EPI.tracheal_basal
EPI.tracheal_submucosal_gland
EPI.tracheal_suprabasal
fibroblast
FIB.adventitial
FIB.barrier_purinergic
FIB.barrier_secretory
FIB.hepatic_stellate_cell
FIB.interstitial
FIB.lung_alveolar
FIB.neurolectin_mucosa
FIB.perivascular_interface
FIB.reticular
FIB.skin_neurosecretory
FIB.skin_papillary
FIB.skin_sheath
FIB.skin_tenogenic
FIB.suburothelial
FIB.tracheal_subepithelial
FIB.transitioning
granulocyte
granulosa_cell
haematopoietic_progenitor_cell
hepatocyte
HEP.acute_phase
HEP.canalicular_transport
- HEP.canalicular_transport.baseline
- HEP.canalicular_transport.ductular_like_transition
- HEP.canalicular_transport.inflammatory
- HEP.canalicular_transport.injury_stress
- HEP.canalicular_transport.pericentral_like_hypoxia
- HEP.canalicular_transport.secretory_ERAD_UPR
- HEP.canalicular_transport.sterol_lipid_biosynthesis
HEP.pericentral_lipoprotein
HEP.periportal_metabolic
- HEP.periportal_metabolic.acute_phase_barrier
- HEP.periportal_metabolic.apolipoprotein_secretory
- HEP.periportal_metabolic.canonical_urea_cycle
- HEP.periportal_metabolic.inflammatory_activated
- HEP.periportal_metabolic.stress_chaperone
- HEP.periportal_metabolic.stress_checkpoint
- HEP.periportal_metabolic.urea_onecarbon_secretory
- HEP.periportal_metabolic.xenobiotic_detox
induced_pluripotent_stem_cell
innate_lymphoid_cell_2
macrophage
melanocyte
mesothelial_cell
microglia
monocyte
muscle_stem_cell
natural_killer_cell
NK.natural_killer_cell
- NK.adaptive_adipose_stress
- NK.adaptive_axis_baseline
- NK.adaptive_biosynthetic_primed
- NK.adaptive_classII_inhibitory
- NK.adaptive_HLAE_tuned
- NK.adaptive_immature_precursor
- NK.adaptive_terminal_cytotoxic
- NK.cytokine_axis_baseline
- NK.cytokine_biosynthetic_primed
- NK.cytokine_lung_immediate_early
- NK.cytokine_quiescent
- NK.cytokine_repair_primed
- NK.cytokine_tissue_activation
- NK.cytokine_tissue_resident
- NK.cytokine_vascular_patrolling
- NK.immature_bridge
neuron
oligodendrocyte
oligodendrocyte_precursor_cell
pericyte
plasma_cell
platelet
schwann_cell
skeletal_muscle_cell
smooth_muscle_cell
T_cell
T.CD4_cytotoxic
T.CD4_naive
- T.CD4_naive.activated_stress
- T.CD4_naive.gut_prone
- T.CD4_naive.homeostatic
- T.CD4_naive.mature
- T.CD4_naive.mature_mitoprot
- T.CD4_naive.neddylation
- T.CD4_naive.neddylation_mitoprot
- T.CD4_naive.proteostasis
- T.CD4_naive.proteostasis_mitoprot
- T.CD4_naive.purinergic
- T.CD4_naive.resist_bystander
- T.CD4_naive.survival
- T.CD4_naive.survival_mitoprot
- T.CD4_naive.survival_neddylation
- T.CD4_naive.Treg_like
T.CD4_Tcm
- T.CD4_Tcm.APC_mimicry
- T.CD4_Tcm.baseline
- T.CD4_Tcm.crosstalk_myeloid
- T.CD4_Tcm.DC_interact
- T.CD4_Tcm.effector_like
- T.CD4_Tcm.imprinted_splicing
- T.CD4_Tcm.migratory_cilium
- T.CD4_Tcm.regulatory_poised
- T.CD4_Tcm.retro_ZNF117
- T.CD4_Tcm.RNA_control
- T.CD4_Tcm.secretory
- T.CD4_Tcm.stress
- T.CD4_Tcm.synapse_dynamics
- T.CD4_Tcm.Tfh_like
- T.CD4_Tcm.Th2_like
- T.CD4_Tcm.tissue_homing
T.CD4_Tem
T.CD4_Tfh
T.CD4_Th17
T.CD4_Th2
T.CD4_transitional
T.CD4_Treg
T.CD4_Trm
T.CD8_naive
T.CD8_Tcm
T.CD8_Tem
T.CD8_transitional
T.CD8_Trm
T.gamma_delta
T.MAIT